Beaver Run Resort Floorplan

Registered Attendees


Registered attendees (and speakers, organizers, etc.) will have access to the following items from their Account page:

  • Abstracts from speakers and poster sessions, including the joint meeting abstracts, available 30 days prior to the meeting (You can edit your own abstract from My Account page as well)

    NOTE: Abstract authors/submitters may choose to not have their abstract available online and in the secure mobile app until a week before the meeting.

  • Full participant list, including joint meeting participants
  • Printable Invoices and Invitation Letters
  • Scholarship Information
  • Lodging Information

Login to My Account page

Single Cell Biology (L1)

Scientific Organizers: Timm Schroeder and Berthold Göttgens


January 13—17, 2019

Beaver Run Resort, Breckenridge, Colorado, USA


Sponsored by 10x Genomics, Bayer AG, BioLegend, Inc. and Cell Research


Meeting is full. Call for details or if you wish to be placed on a waitlist for the meeting.
BEWARE of booking lodging through companies unaffiliated with Keystone Symposia. Click here for more details.

Keystone Symposia is committed to maintaining a positive and respectful environment at its meetings. To this end, please review and comply with our policies.

** Registration currently unavailable **



Discounted Abstract Deadline: October 10, 2018

*All deadlines end at 11:59 PM US Mountain Standard Time

Abstract Submission Fee: 100.00 USD*
Submission by this date receives 50.00 USD discount.
*50.00 USD will be applied to Registration Fee when you register

Abstract Details: It is best to submit your abstract early. Abstract and registration spaces are limited and may fill prior to the abstract or discounted registration deadlines. Submitting an abstract does not constitute or guarantee registration.

Submitting your abstract early allows us to:
  • submit your abstract to organizers to be considered for a short talk
  • accept your abstract online
  • include your abstract on our website and in our secure mobile app
  • reserve your space at the meeting for a poster presentation.**
**Submitting an abstract does not constitute or guarantee registration.
(The Abstract Deadline: is October 18, 2018)

Global Health Travel Award Deadline:

*All deadlines end at 11:59 PM US Mountain Standard Time


Global Health Travel Award Details: You MUST complete your Global Health Travel Award appplication by the Global Health Travel Award Deadline and complete the other required steps (verify your contact information and submit a recommendation letter) to be considered for a travel award.


Click here to learn more about Global Health Travel Awards.

Scholarship Deadline: October 10, 2018

*All deadlines end at 11:59 PM US Mountain Standard Time


Scholarship Details: You MUST submit your abstract by the Scholarship Deadline and complete the other required steps (submit a scholarship application and submit a mentor letter) to be considered for a scholarship.

Click here to learn more about Scholarships.

Abstract Deadline: October 18, 2018

*All deadlines end at 11:59 PM US Mountain Standard Time


Abstract Submission Fee: 100.00 USD*
*50.00 USD will be applied to Registration Fee when you register

Details: It is best to submit your abstract early. Abstract and registration spaces are limited and may fill prior to the abstract or discounted registration deadline. Submitting an abstract does not constitute or guarantee registration.

Submitting your abstract by the Abstract Deadline allows us to:

  • submit your abstract to organizers to be considered for a short talk
  • include your abstract on our website and in our secure mobile app
  • reserve your space at the meeting for a poster presentation.**
**Submitting an abstract does not constitute or guarantee registration.
Abstracts submitted after the Abstract Deadline will NOT be considered for a short talk.

(Discounted Abstract Deadline: is October 10, 2018)

Discounted Registration Deadline: November 15, 2018

*All deadlines end at 11:59 PM US Mountain Standard Time


Registration Fee: 845.00 USD* (includes 200.00 USD discount)
Student Registration Fee: 620.00 USD* (must complete student verification form)

*Includes 50.00 USD of your abstract submission fee

After the Discounted Registration Deadline:


Registration Fee: 1045.00 USD*
Student Registration Fee: 820.00 USD* (must complete student verification form)

*Includes 50.00 USD of your abstract submission fee

Registration spaces are limited and may fill prior to discounted registration deadline.

Please be advised that some meeting participants have received calls and emails from a number of different housing services, including "Exhibitors Housing Services," “Expo Housing Services,” "Global Housing," etc. THESE COMPANIES ARE NOT AFFILIATED WITH KEYSTONE SYMPOSIA and are not authorized by Keystone Symposia to contact you. These companies may tell you that the meeting is filling, without any actual knowledge to that effect, and pressure you into giving them your credit card number to make a lodging reservation with them.

We highly recommend that you not make a reservation with these companies or any other housing service! These companies' representations to participants have been misleading. Please report any calls or correspondence you might have received to Keystone Symposia and book only through lodging links in your Keystone Symposia account, an established travel agency or directly with the hotel(s) listed on our website.
No registration fees are used to fund entertainment or alcohol at this conference

Conference Program    Print  |   View meeting in 12 hr (am/pm) time


The meeting will begin on Sunday, January 13 with registration from 16:00 to 20:00 and a welcome mixer from 18:00 to 20:00. Conference events conclude on Thursday, January 17 with a closing plenary session from 17:00 to 19:00, followed by a social hour and entertainment. We recommend return travel on Friday, January 18 in order to fully experience the meeting.

SUNDAY, JANUARY 13

16:00—20:00
Arrival and Registration

Colorado Ballroom Foyer
18:00—20:00
Welcome Mixer
No registration fees are used to fund alcohol served at this function.

Colorado Ballroom Foyer

MONDAY, JANUARY 14

07:00—08:00
Breakfast

Summit Gallery
08:00—09:00
Welcome and Keynote Address
Registered attendees can view abstracts starting on 12/13/2018

Colorado Ballroom
* Berthold Göttgens, Cambridge Institute for Medical Research, UK

* Timm Schroeder, ETH Zürich, Switzerland

Scott E. Fraser, University of Southern California, USA
Multimodal Single Cell Imaging

09:00—11:30
Single Cell Computational Biology
Registered attendees can view abstracts starting on 12/13/2018

Colorado Ballroom
* Timm Schroeder, ETH Zürich, Switzerland

Fabian Theis, Helmholtz Zentrum München, Germany
Modeling Cell Fate Choice Control from Single Cell Data

Coffee Break

Rahul Satija, New York Genome Center, USA
Integrated Analysis of Single Cell Data across Modalities, Technologies, and Species

Dana Pe'er, Memorial Sloan Kettering Cancer Center, USA
Computational Tools to Advance Single Cell Biology

Chuangqi Wang, Worcester Polytechnic Institute, USA
Short Talk: A Machine Learning Approach to Deconvolve Subcellular Protrusion Heterogeneity and the Underlying Actin Regulator Dynamics from Live Cell Imaging

Hanchuan Peng, Allen Institute for Brain Science, USA
Short Talk: Large-Scale Reconstruction of 3D Full Morphology of Mouse Neurons at Whole Brain Scale

11:30—17:00
On Own for Lunch

11:30—13:00
Poster Setup

Breckenridge Ballroom
13:00—22:00
Poster Viewing

Breckenridge Ballroom
14:30—16:00
Workshop 1: Driving Innovation in Single Cell Sequencing Data Analysis

Colorado Ballroom
* Dana Pe'er, Memorial Sloan Kettering Cancer Center, USA

* Rahul Satija, New York Genome Center, USA

Robin Browaeys, VIB-UGent Center for Inflammation Research, Belgium
NicheNet: Modeling Intercellular Communication by Linking Ligands to Target Genes

Andrew Butler, New York Genome Center, USA
Comprehensive Integration of Single Cell Data

George C. Linderman, Yale University, USA
Zero-Preserving Imputation of scRNA-seq Data Using Low-Rank Approximation

Ilya Korsunsky, Harvard Medical School, USA
Harmony for Scalable, Sensitive, and Flexible Linear Multi-Dataset Integration and Batch Correction in Single Cell RNAseq

Xiang Zhou, University of Michigan, USA
Integrative Differential Expression and Gene Set Enrichment Analysis in Single Cell RNAseq Studies

Grégoire Altan-Bonnet, National Cancer Institute, National Institutes of Health, USA
Hierarchical Agglomerative Clustering of CyTOF Data Robustly Identifies Immunodeficiencies in Large Cohort of Patients

Shiyi Yang, Boston University, USA
DecontX: In Silico Decontamination of Ambient RNA in Single-Cell RNA-Seq Data

Gregory W. Schwartz, University of Pennsylvania, USA
TooManyCells Identifies and Visualizes Relationships of Single-Cell Clades

Rongxin Fang, UC San Diego & Ludwig Cancer Research, USA
Single-Cell Regulomes Reveal Cell Taxonomy, Architectonic Heterogeneity and Regulatory Elements in Mammalian Cortex

Junil Kim, University of Copenhagen, Denmark
Reconstruction of Gene Regulatory Network from Pseudo-Time Ordered Single-Cell RNA Sequencing Data Using Conditional Mutual Information

Corey M. Williams, University of Virginia, USA
Trajectory Mapping in Single Cell Time Course Datasets using FLOW-MAP: A Graph-based, Force-directed Layout Algorithm

Robrecht Cannoodt, Ghent University, Belgium
Dynbenchmark: Assessing Accuracy, Scalability, Robustness and Usability of Single-Cell Trajectory Inference Methods

Wouter Saelens, Ghent University, Belgium
Dyno: Inferring, Visualising and Interpreting Single-Cell Trajectories

16:00—16:30
Panel: Future Directions for Single Cell Computational Biology

* Berthold Göttgens, Cambridge Institute for Medical Research, UK

Dana Pe'er, Memorial Sloan Kettering Cancer Center, USA

Rahul Satija, New York Genome Center, USA

Fabian Theis, Helmholtz Zentrum München, Germany

Allon Klein, Harvard University, USA

16:30—17:00
Coffee Available

Colorado Ballroom Foyer
17:00—19:00
Development at Single Cell Resolution
Registered attendees can view abstracts starting on 12/13/2018

Colorado Ballroom
* Ellen V. Rothenberg, California Institute of Technology, USA

Berthold Göttgens, Cambridge Institute for Medical Research, UK
Mapping Development a Single Cell Resolution

Amos Tanay, Weizmann Institute, Israel
Single Cell Epigenetics and Transcriptional Control of Cellular States

Allon Klein, Harvard University, USA
Cell Fate Diversification Analyzed at Single Cell Resolution

Samantha A. Morris, Washington University in St Louis, USA
Short Talk: Single-Cell Mapping of Lineage and Identity in Direct Reprogramming

Julie B. Sneddon, University California, San Francisco, USA
Short Talk: Lineage Dynamics of Pancreatic Endocrine Development at Single-Cell Resolution

19:00—20:00
Social Hour with Lite Bites
No registration fees are used to fund alcohol served at this function.

Breckenridge Ballroom
19:30—22:00
Poster Session 1

Breckenridge Ballroom

TUESDAY, JANUARY 15

07:00—08:00
Breakfast

Summit Gallery
08:00—11:30
From Single Cell Measurements to Molecular Mechanisms
Registered attendees can view abstracts starting on 12/13/2018

Colorado Ballroom
* Patricia Ernst, University of Colorado Anschutz Medical Center, USA

Lucas Pelkmans, University of Zürich, Switzerland
Crossing Scales in Single Cell Biology

Ellen V. Rothenberg, California Institute of Technology, USA
Single-Cell Insights into Molecular Mechanisms Controlling Lymphoid Cell Fates

Coffee Break

Caroline Uhler, Massachusetts Institute of Technology, USA
From Single Cell Measurements to Computational Models of Gene Networks and 3D DNA Organization

Timm Schroeder, ETH Zürich, Switzerland
Analyzing Cell Fate Control Dynamics by Long-Term Single-Cell Quantification

Rene Maehr, University of Massachusetts Medical School, USA
Short Talk: Single-Cell RNA Sequencing-Based CRISPRi Screening Resolves Molecular Drivers of Human Endoderm Development

Min Xue, University of California, Riverside, USA
Short Talk: Dynamic Profiling of Intracellular Signaling Activities in Single Cells

Masahiro Ueda, RKEN, Japan
Short Talk: Automated Live Single-Cell Imaging Analysis of Intracellular Signal Transduction with Single-Molecule Sensitivity

11:30—17:00
On Own for Lunch

11:30—13:00
Poster Setup

Breckenridge Ballroom
13:00—22:00
Poster Viewing

Breckenridge Ballroom
16:30—17:00
Coffee Available

Colorado Ballroom Foyer
17:00—19:00
Imaging in 3D and In Vivo
Registered attendees can view abstracts starting on 12/13/2018

Colorado Ballroom
* Scott E. Fraser, University of Southern California, USA

Cristina Lo Celso, Imperial College London, UK
Healthy and Malignant Haematopoiesis in the Bone Marrow: Dynamic Cells in a Plastic Environment

Prisca Liberali, FMI, Switzerland
Self-Organisation and Symmetry Breaking in Intestinal Organoids

Shosei Yoshida, National Institute for Basic Biology, Japan
Population Dynamics of Motile Spermatogenic Stem Cells In Vivo

Sinem K. Saka, Harvard University / Wyss Institute for Bioinspired Engineering, USA
Short Talk: Immuno-SABER for Highly Multiplexed and Sensitive in Situ Protein Imaging with Signal Amplification

Leo Kunz, ETH Zurich, Switzerland
Short Talk: Visualization and Quantification of Cytokines at the Single Molecule Level in Situ

19:00—20:00
Social Hour with Lite Bites
No registration fees are used to fund alcohol served at this function.

Breckenridge Ballroom
19:30—22:00
Poster Session 2

Breckenridge Ballroom

WEDNESDAY, JANUARY 16

07:00—08:00
Breakfast

Summit Gallery
08:00—11:30
New Technology for New Biology
Registered attendees can view abstracts starting on 12/13/2018

Colorado Ballroom
* Xiaowei Zhuang, Harvard University, USA

Stephen Quake, Stanford University, USA
Fluidics Devices for Single Cell Quantification and Manipulation

Bart Deplancke, Swiss Federal Institute of Technology Lausanne, Switzerland
Predicting Complex Phenotypes from Single Cell Data

Coffee Break

Georg Seelig, University of Washington, USA
Single-Cell Profiling of the Developing Mouse Brain and Spinal Cord with Split-Pool Barcoding

Alex K. Shalek, Massachusetts Institute of Technology, USA
New Technologies for Complex Single Cell Profiling

Gary Hon, UT Southwestern Medical Center, USA
Short Talk: Rational Reprogramming of Cellular States by Single-Cell Combinatorial Perturbation

Breanna DiAndreth, Massachusetts Institute of Technology, USA
Short Talk: One-Pot Transfection Method for Rapid Characterization and Optimization of Genetic Systems

Luca Rappez, EMBL, Germany
Short Talk: Spatial Single-Cell Profiling of Intracellular Metabolomes in Situ

11:30—17:00
On Own for Lunch

11:30—13:00
Poster Setup

Breckenridge Ballroom
13:00—22:00
Poster Viewing

Breckenridge Ballroom
16:30—17:00
Coffee Available

Colorado Ballroom Foyer
17:00—19:00
Extracting Information from Highdimensional Measurements
Registered attendees can view abstracts starting on 12/13/2018

Colorado Ballroom
* Lucas Pelkmans, University of Zürich, Switzerland

Garry P. Nolan, Stanford University, USA
Pathology from the Molecular Scale on Up

Xiaowei Zhuang, Harvard University, USA
Single-cell Transcriptome and Genome Imaging

Remco Loos, Celgene Institute for Translational Research Europe, Spain
Understanding Heterogeneity in Acute Myeloid Leukemia through Bulk and Single-Cell Gene Expression Profiling

Fan Zhang, Harvard Medical School, USA
Short Talk: Integrating Bulk and Single-cell Transcriptomics with Mass Cytometry Data to Define Inflammatory Cell States in Rheumatoid Arthritis

19:00—20:00
Social Hour with Lite Bites
No registration fees are used to fund alcohol served at this function.

Breckenridge Ballroom
19:30—22:00
Poster Session 3

Breckenridge Ballroom

THURSDAY, JANUARY 17

07:00—08:00
Breakfast

Summit Gallery
07:30—08:00
Poster Setup

Breckenridge Ballroom
08:00—19:00
Poster Viewing

Breckenridge Ballroom
08:00—11:15
Reconstructing Cell Lineages
Registered attendees can view abstracts starting on 12/13/2018

Colorado Ballroom
* Allon Klein, Harvard University, USA

Thomas Hofer, Deutsches Krebsforschungszentrum, Germany
Modeling Population Dynamics of Lineage Pathways through Barcoding Analysis

Barbara Wold, California Institute of Technology, USA
Following Cellular Reprogramming at the Single Cell Level

Coffee Break

Wolf Reik, Babraham Institute, UK
Defining Cell States by Single Cell Multi-Omics

Fernando D. Camargo, Boston Children's Hospital, USA
Cellular Barcoding in Mammalian Systems

Aziz Al'Khafaji, University of Texas at Austin, USA
Short Talk: Studying Therapeutic Resistance in Chronic Lymphocytic Leukemia using Functionalized Lineage Tracing

Bushra Raj, Harvard University, USA
Short Talk: Reconstruction of Brain Specification and Lineage Trees with Single-Cell Profiling and CRISPR Recorders

11:15—12:00
Lunch

Breckenridge Ballroom
12:00—14:30
Poster Session 4

Breckenridge Ballroom
14:30—16:30
Workshop 2: Novel Single Cell Technologies

Colorado Ballroom
* Bart Deplancke, Swiss Federal Institute of Technology Lausanne, Switzerland

Keyue Ma, University of Texas at Austin, USA
High-Throughput Single-Cell Linking of Antigen Specificity to T Cell Receptor Sequences

Christopher S. McGinnis, University of California, San Francisco, USA
MULTI-seq: Scalable Sample Multiplexing for Single-Cell RNA Sequencing using Lipid-Tagged Indices

Arnav Moudgil, Washington University in St. Louis, USA
Joint Assay of Single Cell RNA-Seq and Transcription Factor Binding

Mandeep Singh, , Australia
Linking High-Throughput Single-Cell RNA Sequencing with Targeted Long-Read Sequencing

Chengzhe Tian, University of Colorado, Boulder, USA
A “Global Tracker” for Hard-to-Track Cancer Cells Reveals Substantial Heterogeneity in the Dynamics of Single-Cell Drug Responses

David M. Suter, , Switzerland
Single Live Cell Monitoring of Protein Turnover Reveals Intercellular Variability and Cell Cycle Dependence of Degradation Rates

Emily B. Fabyanic, University of Pennsylvania, USA
Probing the Mammalian Hydroxymethylome at Single-Cell Resolution Using a DNA Deaminase

16:30—17:00
Coffee Available

Colorado Ballroom Foyer
17:00—18:45
Neuroscience at Single Cell Resolution
Registered attendees can view abstracts starting on 12/13/2018

Colorado Ballroom
* Prisca Liberali, FMI, Switzerland

Hongkui Zeng, Allen Institute for Brain Science, USA
Cell Type Classification in the Mouse Brain

Rick F. Horwitz, Allen Institute for Cell Science, USA
Conjoining Single Cell Imaging, Genomics, and Computation to Create a Stem Cell State Space

Barbara Treutlein, Max Planck Institute for Evolutionary Anthropology, Germany
Single-Cell Transcriptomics Uncovers Convergence of Cell Identities during Axolotl Limb Regeneration

Farimah Mapar, , USA
Short Talk: Design and Analysis of Staged Mutual Inhibition: Using Single Neuron Computation to Implement Bi-Stable Neuronal Toggle Switch

18:45—19:00
Meeting Wrap-Up: Outcomes and Future Directions (Organizers)
Registered attendees can view abstracts starting on 12/13/2018

Colorado Ballroom
19:00—20:00
Social Hour with Lite Bites
No registration fees are used to fund alcohol served at this function.

Breckenridge Ballroom
20:00—23:00
Entertainment
Entertainment is not subsidized by conference registration fees nor any U.S. federal government grants. Funding for this expense is provided by other revenue sources.

Breckenridge Ballroom

FRIDAY, JANUARY 18

 
Departure


*Session Chair †Invited, not yet responded.



We gratefully acknowledge support for this conference from:


Directors' Fund


These generous unrestricted gifts allow our Directors to schedule meetings in a wide variety of important areas, many of which are in the early stages of research.

Click here to view all of the donors who support the Directors' Fund.



Keystone Symposia thanks our Sponsors for generously supporting this meeting:

Bayer AG BioLegend, Inc.
Cell Research
 

We gratefully acknowledge additional support from these exhibitors at this conference:

Molecular Machines & Industries 10x Genomics
Please stop by to meet these exhibitors during the conference.


We gratefully acknowledge additional support for this conference from:

Chroma Technology Corporation ProteinSimple, a Bio-Techne brand

We gratefully acknowledge additional in-kind support for this conference from those foregoing speaker expense reimbursements:



Celgene Corporation


We appreciate the organizations that provide Keystone Symposia with additional support, such as marketing and advertising:


Click here to view more of these organizations


Special thanks to the following for their support of Keystone Symposia initiatives to increase participation at this meeting by scientists from underrepresented backgrounds:


Click here to view more of these organizations


If your organization is interested in joining these entities in support of Keystone Symposia, please contact: Sarah Lavicka, Director of Development, Email: sarahl@keystonesymposia.org,
Phone:+1 970-262-2690

Click here for more information on Industry Support and Recognition Opportunities.

If you are interested in becoming an advertising/marketing in-kind partner, please contact:
Yvonne Psaila, Director, Marketing and Communications, Email: yvonnep@keystonesymposia.org,
Phone:+1 970-262-2676